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Update pango-designation to 1.31 #52213

Merged
merged 2 commits into from
Nov 20, 2024
Merged

Update pango-designation to 1.31 #52213

merged 2 commits into from
Nov 20, 2024

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Update pango-designation: 1.301.31

install with bioconda Conda

Info Link or Description
Recipe recipes/pango-designation (click to view/edit other files)
Summary Repository for suggesting new lineages that should be added to the current
Home https://github.com/cov-lineages/pango-designation
Releases https://github.com/cov-lineages/pango-designation/tags
Recipe Maintainer(s) @corneliusroemer
Author @cov-lineages

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Nov 20, 2024
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coderabbitai bot commented Nov 20, 2024

📝 Walkthrough
📝 Walkthrough

Walkthrough

The pull request introduces an update to the meta.yaml file for the pango-designation package. The version number has been incremented from "1.30" to "1.31". Correspondingly, the source URL has been updated to reflect this new version, changing from v1.30 to v1.31. Additionally, the SHA256 checksum has been revised to ensure the integrity of the new version's source, with the checksum changing from 835075a7410d4d3a59003105a993358ce20f4ee744231f9728092756a8f2e8d6 to 6e82abfbb368023bd07d409d4c4f04473fa3aa36a76bb22a564b4d3cb98ddfda. The build script has been modified to include the --no-cache-dir option, and the setuptools dependency has been added to the host requirements. The license and license file entries have been reformatted to use quotes, and a new dev_url field has been introduced, providing a link to the package's development repository. The summary field has also been reformatted to include quotes.

Possibly related PRs


📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 8abfc96 and 9a59982.

📒 Files selected for processing (1)
  • recipes/pango-designation/meta.yaml (3 hunks)
🧰 Additional context used
🪛 yamllint
recipes/pango-designation/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (6)
recipes/pango-designation/meta.yaml (6)

1-1: LGTM: Version update matches PR objectives

The version bump from 1.30 to 1.31 is correctly implemented.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


14-14: LGTM: Build script enhancement

The addition of --no-cache-dir to pip install command is a good practice for conda builds to ensure clean installations.


34-37: LGTM: Improved metadata formatting and completeness

The changes enhance the recipe's metadata:

  • Proper YAML quoting for strings containing special characters
  • Addition of dev_url provides useful reference to the development repository

Line range hint 1-41: Verify version compatibility

Let's check the changelog/release notes for any breaking changes in version 1.31.

✅ Verification successful

Based on the output, I can generate the final response as we have sufficient information from the commit history and release notes. The changes appear to be primarily lineage designations and updates to lineage notes, without any breaking changes.

Version 1.31 appears safe to use

The changes in this version are primarily:

  • New lineage designations (e.g., XEH, XEJ, XEK, etc.)
  • Updates to lineage notes
  • No breaking changes, API modifications, or deprecations observed
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Check release notes for version 1.31
VERSION="1.31"
echo "Fetching release notes for v${VERSION}..."
gh api repos/cov-lineages/pango-designation/releases/tags/v${VERSION} --jq '.body'

# Check for potential breaking changes in recent commits
echo "Checking recent commits for breaking changes..."
gh api repos/cov-lineages/pango-designation/commits --jq '.[].commit.message' | grep -i -E 'break|deprecat|remov|chang|updat'

Length of output: 6598

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


8-9: Verify source integrity

Let's validate the SHA256 checksum matches the source tarball.


24-24: Verify setuptools requirement

Let's confirm that setuptools is actually needed for the build process.

✅ Verification successful

Let me check specifically for setup.py or pyproject.toml in the pango-designation package directory.


Let me check the source repository to verify if it uses setup.py or pyproject.toml for installation.


Setuptools requirement is correctly specified

The package uses setup.py for installation, which requires setuptools to be present in the build environment. The host requirement for setuptools is necessary and correctly specified.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Check for setup.py or pyproject.toml usage
echo "Checking for setup.py..."
rg -l "setup\(" 

echo "Checking for pyproject.toml build system..."
fd pyproject.toml

Length of output: 1807


Script:

#!/bin/bash
# Check for setup.py or pyproject.toml in pango-designation
echo "Checking pango-designation directory..."
fd -t f "setup.py|pyproject.toml" recipes/pango-designation/

# Check package source for build system
echo -e "\nChecking source files..."
cat recipes/pango-designation/meta.yaml

Length of output: 1271


Script:

#!/bin/bash
# Download and check the source tarball contents
mkdir -p temp
cd temp
curl -sL https://github.com/cov-lineages/pango-designation/archive/refs/tags/v1.31.tar.gz -o pango.tar.gz
tar tzf pango.tar.gz | grep -E "setup.py|pyproject.toml"

Length of output: 224


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@mencian mencian merged commit 70d17aa into master Nov 20, 2024
6 checks passed
@mencian mencian deleted the bump/pango_designation branch November 20, 2024 01:10
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